Publications of E. Stukenbrock

Amandine, C.; Ebert, D.; Stukenbrock, E.; Rodríguez de la Vega, R. C.; Tiffin, P.; Croll, D.; Tellier, A.: Unraveling coevolutionary dynamics using ecological genomics. Trends in Genetics 38 (10), pp. 1003 - 1012 (2022)

Schotanus, K.; Soyer, J.; Connolly, L.; Grandaubert, J.; Happel, P.; Smith, K.; Freitag, M.; Stukenbrock, E.: Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes. Epigenetics & Chromatin 8, 41 (2015)

Poppe, S.; Dorsheimer, L.; Happel, P.; Stukenbrock, E.: Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola). PLOS Pathogens 11 (7), e1005055 (2015)

Brunner, P.; Torriani, S.; Croll, D.; Stukenbrock, E.; McDonald, B.: Hitchhiking Selection Is Driving Intron Gain in a Pathogenic Fungus. Molecular Biology and Evolution 31 (7), pp. 1741 - 1749 (2014)

Kellner, R.; Bhattacharyya, A.; Poppe, S.; Hsu, T.; Brem, R.; Stukenbrock, E.: Expression Profiling of the Wheat Pathogen Zymoseptoria tritici Reveals Genomic Patterns of Transcription and Host-Specific Regulatory Programs. Genome Biology and Evolution 6 (6), pp. 1353 - 1365 (2014)

Stukenbrock, E.; Croll, D.: The evolving fungal genome. Fungal Biology Reviews 28 (1), pp. 1 - 12 (2014)

Dutheil, J.; Gaillard, S.; Stukenbrock, E.: MafFilter: a highly flexible and extensible multiple genome alignment files processor. BMC Genomics 15, 53 (2014)

Stukenbrock, E.: Speciation Genomics of Fungal Plant Pathogens. FUNGI, pp. 397 - 423 (2014)

Stukenbrock, E. H.: Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens. New Phytologist 199 (4), pp. 895 - 907 (2013)

Brunner, P. C.; Torriani, S. F. F.; Croll, D.; Stukenbrock, E. H.; McDonald, B. A.: Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen. Molecular Biology and Evolution 30 (6), pp. 1337 - 1347 (2013)

Hjortshoj, R. L.; Ravnshoj, A. R.; Nyman, M.; Orabi, J.; Backes, G.; Pinnschmidt, H.; Havis, N.; Stougaard, J.; Stukenbrock, E. H.: High levels of genetic and genotypic diversity in field populations of the barley pathogen Ramularia collo-cygni. European Journal of Plant Pathology 136 (1), pp. 51 - 60 (2013)

Stukenbrock, E. H.; Quaedvlieg, W.; Javan-Nikhah, M.; Zala, M.; Crous, P. W.; McDonald, B. A.: Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola). Mycologia 104 (6), pp. 1397 - 1407 (2012)

Stukenbrock, E. H.; Bataillon, T.: A Population Genomics Perspective on the Emergence and Adaptation of New Plant Pathogens in Agro-Ecosystems. PLoS Pathogens 8 (9), e1002893 (2012)

Stukenbrock, E. H.; Christiansen, F. B.; Hansen, T. T.; Dutheil, J. Y.; Schierup, M. H.: Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species. Proceedings of the National Academy of Sciences of the United States of America 109 (27), pp. 10954 - 10959 (2012)

Tan, K.-C.; Ferguson-Hunt, M.; Rybak, K.; Waters, O. D. C.; Stanley, W. A.; Bond, C. S.; Stukenbrock, E. H.; Friesen, T. L.; Faris, J. D.; McDonald, B. A. et al.; Oliver, R. P.: Quantitative Variation in Effector Activity of ToxA Isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis. Molecular Plant-Microbe Interactions 25 (4), pp. 515 - 522 (2012)

Torriani, S. F. F.; Stukenbrock, E. H.; Brunner, P. C.; McDonald, B. A.; Croll, D.: Evidence for Extensive Recent Intron Transposition in Closely Related Fungi. Current Biology 21 (23), pp. 2017 - 2022 (2011)

Schirawski, J.; Mannhaupt, G.; Münch, K.; Brefort, T.; Schipper, K.; Doehlemann, G.; Di Stasio, M.; Rossel, N.; Mendoza-Mendoza, A.; Pester, D. et al.; Muller, O.; Winterberg, B.; Meyer, E.; Ghareeb, H.; Wollenberg, T.; Munsterkotter, M.; Wong, P.; Walter, M.; Stukenbrock, E.; Guldener, U.; Kahmann, R.: Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison. Science 330 (6010), pp. 1546 - 1548 (2010)

Stukenbrock, E.H.; Dutheil, J.Y.: Comparing fungal genomes: Insight into functional and evolutionary processes. In: Plant Fungal Pathogens: Methods and Protocols, pp. 531 - 548. Springer, New York (2012)