Publications of Julien Dutheil

Schweizer, G.; Haider, M. B.; Barroso, G. V.; Rössel, N.; Münch, K.; Kahmann, R.; Dutheil, J.: Population genomics of the maize pathogen Ustilago maydis: Demographic history and role of virulence clusters in adaptation. Genome Biology and Evolution 13 (5), evab073 (2021)

Schweizer, G.; Muench, K.; Mannhaupt, G.; Schirawski, J.; Kahmann, R.; Dutheil, J. Y.: Positively Selected Effector Genes and Their Contribution to Virulence in the Smut Fungus Sporisorium reilianum. GENOME BIOLOGY AND EVOLUTION 10 (2), pp. 629 - 645 (2018)

Tollot, M.; Assmann, D.; Becker, C.; Altmuller, J.; Dutheil, J.Y.; Wegner, C.-E.; Kahmann, R.: The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis. PLoS Pathogens 12 (6), e1005697 (2016)

Dutheil, J.Y.; Mannhaupt, G.; Schweizer, G.; Sieber, C.M.K.; Münsterkotter, M.; Güldener, U.; Schirawski, J.; Kahmann, R.: A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi. Genome Biology and Evolution 8 (3), pp. 681 - 704 (2016)

Figuet, E.; Romiguier, J.; Dutheil, J.; Galtier, N.: Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals. Journal of Evolutionary Biology 27 (5), pp. 899 - 910 (2014)

Dutheil, J.; Gaillard, S.; Stukenbrock, E.: MafFilter: a highly flexible and extensible multiple genome alignment files processor. BMC Genomics 15, 53 (2014)

Gueguen, L.; Gaillard, S.; Boussau, B.; Gouy, M.; Groussin, M.; Rochette, N. C.; Bigot, T.; Fournier, D.; Pouyet, F.; Cahais, V. et al.; Bernard, A.; Scornavacca, C.; Nabholz, B.; Haudry, A.; Dachary, L.; Galtier, N.; Belkhir, K.; Dutheil, J. Y.: Bio plus plus: Efficient Extensible Libraries and Tools for Computational Molecular Evolution. Molecular Biology and Evolution 30 (8), pp. 1745 - 1750 (2013)

Stukenbrock, E. H.; Christiansen, F. B.; Hansen, T. T.; Dutheil, J. Y.; Schierup, M. H.: Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species. Proceedings of the National Academy of Sciences of the United States of America 109 (27), pp. 10954 - 10959 (2012)

Stukenbrock, E.H.; Dutheil, J.Y.: Comparing fungal genomes: Insight into functional and evolutionary processes. In: Plant Fungal Pathogens: Methods and Protocols, pp. 531 - 548. Springer, New York (2012)