Publications of Adán Andrés Ramírez Rojas

Pozhydaieva, Nadiia, Billau, Franziska Anna, Wolfram-Schauerte, Maik, Ramírez Rojas, Adán Andrés, Paczia, Nicole, Schindler, Daniel and Höfer, Katharina: (2024) Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications, PLOS Genetics, San Francisco, CA, Public Library of Science, 20 (9).

Brück, Michel, Köbel, Tania S., Dittmar, Sophie, Ramírez Rojas, Adán Andrés, Georg, Jens, Berghoff, Bork A. and Schindler, Daniel: (2024) A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs, iScience, Amsterdam ; Bosten ; London ; New York ; Oxford ; Paris ; Philadelphia ; San Diego ; St. Louis, Elsevier, 27 (9).

Lindeboom, Timon Alexander, Sanchez Olmos, Maria del Carmen, Schulz, Karina, Brinkmann, Cedric K., Ramírez Rojas, Adán Andrés, Hochrein, Lena and Schindler, Daniel: (2024) An optimized genotyping workflow for identifying highly SCRaMbLEd synthetic yeasts, ACS Synthetic Biology, Washington, D.C., American Chemical Society, 13 (4), pp. 1116–1127.

Ramírez Rojas, Adán Andrés, Brinkmann, Cedric K., Köbel, Tania S. and Schindler, Daniel: (2024) DuBA.flow─A low-cost, long-read amplicon sequencing workflow for the validation of synthetic DNA constructs, ACS Synthetic Biology, Washington, D.C., American Chemical Society, January.

Abramczyk, Dariusz, Sanchez Olmos, Maria del Carmen, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Robertson, Daniel, McColm, Stephen, Marston, Adele L. and Barlow, Paul N.: (2023) A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material, Microbial Cell Factories, BioMed Central, 22 (1).

Luo, Shanshan, Diehl, Christoph, He, Hai, Bae, YoungJun, Klose, Melanie, Claus, Peter, Cortina, Nina Socorro, Fernandez, Celia Alvarez, Schulz-Mirbach, Helena Anna Maria, McLean, Richard, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Paczia, Nicole and Erb, Tobias J.: (2023) Construction and modular implementation of the THETA cycle for synthetic CO₂ fixation, Nature Catalysis, New York, Nature Publishing Group, 6 (12), pp. 1228–1240.

Steube, Niklas, Moldenhauer, Marcus, Weiland, Paul, Saman, Dominik, Kilb, Alexandra, Ramírez Rojas, Adán Andrés, Garg, Sriram, Schindler, Daniel, Graumann, Peter L., Benesch, Justin L. P., Bange, Gert, Friedrich, Thomas and Hochberg, Georg K. A.: (2023) Fortuitously compatible protein surfaces primed allosteric control in cyanobacterial photoprotection, Nature Ecology & Evolution, London, Nature Publishing Group, 7, pp. 756–767.

Ramírez Rojas, A. A., Swidah, R. and Schindler, D.: (2022) Microbes of traditional fermentation processes as synthetic biology chassis to tackle future food challenges, Frontiers in Bioengineering and Biotechnology, Lausanne, Frontiers Media, 10, October.

Ramírez Rojas, Adán Andrés, Brinkmann, Cedric K. and Schindler, Daniel: (2025) Validation of Golden Gate Assemblies using highly multiplexed nanopore amplicon sequencing, in Schindler, Daniel Ed., Golden Gate Cloning. Methods in Molecular Biology, Humana, New York, NY, pp. 171–196.

Ramírez Rojas, Adán Andrés: (2024) Title not yet available, Philipps-Universität Marburg.

Brueck, Michel, Koebel, Tania S., Dittmar, Sophie, Ramírez Rojas, Adán Andrés, Georg, Jens, Berghoff, Bork A. and Schindler, Daniel: (2024) A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs, bioRxiv: the preprint server for biology.

Wolfram-Schauerte, Maik, Moskalchuk, Anastassiya, Pozhydaieva, Nadiia, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Kaiser, Stefanie, Paczia, Nicole and Höfer, Katharina: (2024) T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme, bioRxiv: the preprint server for biology.

Pozhydaieva, Nadiia, Billau, Franziska Anna, Wolfram-Schauerte, Maik, Ramírez Rojas, Adán Andrés, Paczia, Nicole, Schindler, Daniel and Höfer, Katharina: (2024) Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications, bioRxiv: the preprint server for biology.

Abramczyk, Dariusz, Sanchez Olmos, Maria del Carmen, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Robertson, Daniel, McColm, Stephen, Marston, Adele and Barlow, Paul: (2023) A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material, bioRxiv: the preprint server for biology.