Publications of Nicole Paczia

Zheng, Liujuan, Li, Wei, Christ, Marvin, Paczia, Nicole, Buckel, Wolfgang, Mais, Christopher-Nils, Bolker, Michael, Freitag, Johannes and Bange, Gert: (2025) Mechanistic and structural insights into the itaconate-producing trans-aconitate decarboxylase Tad1., PNAS Nexus, Oxford, Oxford University Press, 4 (3).

Orsi, Enrico, Schulz-Mirbach, Helena, Cotton, Charles A. R., Satanowski, Ari, Petri, Henrik M., Arnold, Susanne L., Grabarczyk, Natalia, Verbakel, Rutger, Jensen, Karsten S., Donati, Stefano, Paczia, Nicole, Glatter, Timo, Küffner, Andreas. M., Chotel, Tanguy, Schillmüller, Farah, De Maria, Alberto, He, Hai, Lindner, Steffen N., Noor, Elad, Bar-Even, Arren, Erb, Tobias J. and Nikel, Pablo I.: (2025) Computation-aided designs enable developing auxotrophic metabolic sensors for wide-range glyoxylate and glycolate detection, Nature Communications, London, Nature Publishing Group, 16 (1).

Schulz-Mirbach, Helena, Wichmann, Philipp, Satanowski, Ari, Meusel, Helen, Wu, Tong, Nattermann, Maren, Burgener, Simon, Paczia, Nicole, Bar-Even, Arren and Erb, Tobias J.: (2024) New-to-nature CO₂-dependent acetyl-CoA assimilation enabled by an engineered B12-dependent acyl-CoA mutase, Nature Communications, London, Nature Publishing Group, 15, November.

Lago-Maciel, Ana, Soares, Jessica C, Zarzycki, Jan, Buchanan, Charles James, Reif-Trauttmansdorff, Tristan, Schmidt, Frederik V., Lometto, Stefano, Paczia, Nicole, Schuller, Jan M, Hansen, D Flemming, Heller, Gabriella T, Prinz, Simone, Hochberg, Georg K. A., Pierik, Antonio J and Rebelein, Johannes G.: (2024) Methylthio-alkane reductases use nitrogenase metalloclusters for carbon-sulfur bond cleavage, bioRxiv: the preprint server for biology, Cold Spring Harbor, NY, Cold Spring Harbor Laboratory, October.

He, Hai, Gómez-Coronado, Paul A., Zarzycki, Jan, Barthel, Sebastian, Kahnt, Jörg, Claus, Peter, Klein, Moritz, Klose, Melanie, de Crécy-Lagard, Valérie, Schindler, Daniel, Paczia, Nicole, Glatter, Timo and Erb, Tobias J.: (2024) Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies, Nature Communications, London, Nature Publishing Group, 15 (1).

Barthel, Sebastian, Brenker, Luca, Diehl, Christoph, Bohra, Nithin, Giaveri, Simone, Paczia, Nicole and Erb, Tobias J.: (2024) in vitro transcription-based biosensing of glycolate for prototyping of a complex enzyme cascade, Synthetic Biology, September.

Pozhydaieva, Nadiia, Billau, Franziska Anna, Wolfram-Schauerte, Maik, Ramírez Rojas, Adán Andrés, Paczia, Nicole, Schindler, Daniel and Höfer, Katharina: (2024) Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications, PLOS Genetics, San Francisco, CA, Public Library of Science, 20 (9).

Scarinci, Giovanni, Ariens, Jan-Luca, Angelidou, Georgia, Schmidt, Sebastian, Glatter, Timo, Paczia, Nicole and Sourjik, Victor: (2024) Enhanced metabolic entanglement emerges during the evolution of an interkingdom microbial community, Nature Communications, London, Nature Publishing Group, 15 (1).

Arias-Rojas, Aranzazu, Arifah, Adini Q, Angelidou, Georgia, Alshaar, Belal, Schombel, Ursula, Forest, Emma, Frahm, Dagmar, Brinkmann, Volker, Paczia, Nicole, Beisel, Chase L, Gisch, Nicolas and Iatsenko, Igor: (2024) MprF-mediated immune evasion is necessary for Lactiplantibacillus plantarum resilience in the Drosophila gut during inflammation., PLOS Pathogens, San Francisco, CA, Public Library of Science, 20 (8).

Schulz-Mirbach, Helena, Krüsemann, Jan Lukas, Andreadaki, Theofania, Nerlich, Jana Natalie, Mavrothalassiti, Eleni, Boecker, Simon, Schneider, Philipp, Weresow, Moritz, Abdelwahab, Omar, Paczia, Nicole, Dronsella, Beau, Erb, Tobias J., Bar-Even, Arren, Klamt, Steffen and Lindner, Steffen N: (2024) Engineering new-to-nature biochemical conversions by combining fermentative metabolism with respiratory modules., Nature Communications, London, Nature Publishing Group, 15 (1).

Schann, Karin, Bakker, Jenny, Boinot, Maximilian, Kuschel, Pauline, He, Hai, Nattermann, Maren, Paczia, Nicole, Erb, Tobias J., Bar-Even, Arren and Wenk, Sebastian: (2024) Design, construction and optimization of formaldehyde growth biosensors with broad application in biotechnology., Microbial Biotechnology, Oxford, Wiley-Blackwell, 17 (7).

Giaveri, Simone, Bohra, Nithin, Diehl, Christoph, Yang, Hao Yuan, Ballinger, Martine, Paczia, Nicole, Glatter, Timo and Erb, Tobias J.: (2024) Integrated translation and metabolism in a partially self-synthesizing biochemical network, Science, Washington, D.C., American Association for the Advancement of Science, 385 (6705), pp. 174–178.

Schada v. Borzyskowsi, Lennart, Lucas, Hermann, Kremer, Katharina, Barthel, Sebastian, Pommerenke, Bianca, Glatter, Timo, Paczia, Nicole, Erhard, Bremer and Erb, Tobias J.: (2024) Multiple levels of transcriptional regulation control glycolate metabolism in Paracoccus denitrificans, mBio, Washington, DC, American Society for Microbiology, 15 (8).

Burt, Marie, Angelidou, Georgia, Mais, Christopher Nils, Preußer, Christian, Glatter, Timo, Heimerl, Thomas, Groß, Rüdiger, Serrania, Javier, Boosarpu, Gowtham, Pogge von Strandmann, Elke, Müller, Janis A., Bange, Gert, Becker, Anke, Lehmann, Mareike, Jonigk, Danny, Neubert, Lavinia, Freitag, Hinrich, Paczia, Nicole, Schmeck, Bernd and Jung, Anna Lena: (2024) Lipid A in outer membrane vesicles shields bacteria from polymyxins, Journal of extracellular vesicles, Hoboken, NJ, Wiley, 13 (5).

Sendker, Franziska Luisa, Lo, Yat Kei, Heimerl, Thomas, Bohn, Stefan, Persson, Louise J., Mais, Christopher-Nils, Sadowska, Wiktoria, Paczia, Nicole, Nußbaum, Eva, del Carmen Sánchez Olmos, María, Forchhammer, Karl, Schindler, Daniel, Erb, Tobias J., Benesch, Justin L. P., Marklund, Erik G., Bange, Gert, Schuller, Jan M. and Hochberg, Georg K. A.: (2024) Emergence of fractal geometries in the evolution of a metabolic enzyme, Nature, London, Nature Publishing Group, 628 (8009), pp. 894–900.

Nomura, Shunsuke, Paczia, Nicole, Kahnt, Jörg and Shima, Seigo: (2024) Isolation of an H₂-dependent electron-bifurcating CO₂-reducing megacomplex with MvhB polyferredoxin from Methanothermobacter marburgensis, The FEBS Journal, Wiley-Blackwell, 291 (11), pp. 2449–2460.

Schaupp, Sebastian, Arriaza-Gallardo, Francisco J., Paczia, Nicole, Ataka, Kenichi and Shima, Seigo: (2024) Acyl and CO ligands in the [Fe]-hydrogenase cofactor scramble upon photolysis, Angewandte Chemie International Edition, Weinheim, Wiley-VCH, 63 (6).

Nattermann, M., Wenk, S., Pfister, Pascal, He, H., Lee, S.H., Szymanski, W., Guntermann, N., Zhu, F., Nickel, L., Wallner, C., Zarzycki, J., Paczia, N., Gaißert, N., Franciò, G., Leitner, W., Gonzalez, R. and Erb, T. J.: (2023) Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo, Nature Communications, London, Nature Publishing Group, 14 (1).

Gavriil, Marios, Proietto, Marco, Paczia, Nicole, Ginolhac, Aurelien, Halder, Rashi, Valceschini, Elena, Sauter, Thomas, Linster, Carole L and Sinkkonen, Lasse: (2023) 2-Hydroxyglutarate modulates histone methylation at specific loci and alters gene expression via Rph1 inhibition, Life science alliance, Heidelberg, EMBO Press, 7 (2).

Gomes-Filho, José Vicente, Breuer, Ruth, Morales-Filloy, Hector Gabriel, Pozhydaieva, Nadiia, Borst, Andreas, Paczia, Nicole, Soppa, Jörg, Höfer, Katharina, Jäschke, Andres and Randau, Lennart: (2023) Identification of NAD-RNA species and ADPR-RNA decapping in Archaea, Nature Communications, London, Nature Publishing Group, 14, November.