Publications of Yan-Ni Shi

Su, L.; Souaibou, Y.; Hôtel, L.; Jacob, C.; Grün, P.; Shi, Y.-N.; Chateau, A.; Pinel, S.; Bode, H. B.; Aigle, B. et al.; Weissman, K. J.: Exploiting the inherent promiscuity of the acyl transferase of the stambomycin polyketide synthase for the mutasynthesis of analogues. Chemical Science 16 (12), pp. 5076 - 5088 (2025)

Bozhüyük, K. A. J.; Präve, L.; Kegler, C.; Schenk, L.; Kaiser, S.; Schelhas, C. S.; Shi, Y.-N.; Kuttenlochner, W.; Schreiber, M.; Kandler, J. et al.; Alanjary, M.; Mohiuddin, T. M.; Groll, M.; Hochberg, G. K. A.; Bode, H. B.: Evolution-inspired engineering of nonribosomal peptide synthetases. Science 383 (6689), eadg4320 (2024)

Shi, Y.-M.; Crames, J. J.; Czech, L.; Bozhüyük, K. A. J.; Shi, Y.-N.; Hirschmann, M.; Lamberth, S.; Claus, P.; Paczia, N.; Ruckert, C. et al.; Kalinowski, J.; Bange, G.; Bode, H. B.: Genome mining enabled by biosynthetic characterization uncovers a class of benzoxazolinate-containing natural products in diverse bacteria. Angewandte Chemie, International Edition in English 61 (51), e202206106 (2022)

Shi, Y.-M.; Hirschmann, M.; Shi, Y.-N.; Bode, H. B.: Cleavage off-loading and post-assembly-line conversions yield products with unusual termini during biosynthesis. ACS Chemical Biology 17 (8), pp. 2221 - 2228 (2022)

Shi, Y.-M.; Hirschmann, M.; Shi, Y.-N.; Ahmed, S.; Abebew, D.; Tobias, N. J.; Grun, P.; Crames, J. J.; Pöschel, L.; Kuttenlochner, W. et al.; Richter, C.; Herrmann, J.; Muller, R.; Thanwisai, A.; Pidot, S. J.; Stinear, T. P.; Groll, M.; Kim, Y.; Bode, H. B.: Global analysis of biosynthetic gene clusters reveals conserved and unique natural products in entomopathogenic nematode-symbiotic bacteria. Nature Chemistry 14, pp. 701 - 712 (2022)

Sarawi, S.; Shi, Y.-N.; Lotz-Winter, H.; Reschke, K.; Bode, H. B.; Piepenbring, M.: Occurrence and chemotaxonomical analysis of amatoxins in Lepiota spp. (Agaricales). Phytochemistry 195, 113069 (2022)

Behsaz, B.; Bode, E.; Gurevich, A.; Shi, Y.-N.; Grundmann, F.; Acharya, D.; Caraballo-Rodriguez, A. M.; Bouslimani, A.; Panitchpakdi, M.; Linck, A. et al.; Guan, C.; Oh, J.; Dorrestein, P. C.; Bode, H. B.; Pevzner, P. A.; Mohimani, H.: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery (vol 12, 3225, 2021). Nature Communications 12 (1), 4318 (2021)

Behsaz, B.; Bode, E.; Gurevich, A.; Shi, Y.-N.; Grundmann, F.; Acharya, D.; Caraballo-Rodriguez, A. M.; Bouslimani, A.; Panitchpakdi, M.; Linck, A. et al.; Guan, C.; Oh, J.; Dorrestein, P. C.; Bode, H. B.; Pevzner, P. A.; Mohimani, H.: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery. Nature Communications 12 (1), 3225 (2021)

Tietze, A.; Shi, Y.-N.; Kronenwerth, M.; Bode, H. B.: Nonribosomal peptides produced by minimal and engineered synthetases with terminal reductase domains. Chembiochem 21 (19), pp. 2750 - 2754 (2020)

Bode, E.; Heinrich, A. K.; Hirschmann, M.; Abebew, D.; Shi, Y.-N.; Tien Vo, D.; Wesche, F.; Shi, Y.-M.; Gruen, P.; Simonyi, S. et al.; Keller, N.; Engel, Y.; Wenski, S.; Bennet, R.; Beyer, S.; Bischoff, I.; Buaya, A.; Brandt, S.; Cakmak, I.; Cimen, H.; Eckstein, S.; Frank, D.; Fuerst, R.; Gand, M.; Geisslinger, G.; Hazir, S.; Henke, M.; Heermann, R.; Lecaudey, V.; Schaefer, W.; Schiffmann, S.; Schueffler, A.; Schwenk, R.; Skaljac, M.; Thines, E.; Thines, M.; Ulshoefer, T.; Vilcinskas, A.; Wichelhaus, T. A.; Bode, H. B.: Promoter Activation in Delta hfq Mutants as an Efficient Tool for Specialized Metabolite Production Enabling Direct Bioactivity Testing. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 58 (52), pp. 18957 - 18963 (2019)

Bozhueyuek, K. A. J.; Linck, A.; Tietze, A.; Kranz, J.; Wesche, F.; Nowak, S.; Fleischhacker, F.; Shi, Y.-N.; Gruen, P.; Bode, H. B.: Modification and de novo design of non-ribosomal peptide synthetases using specific assembly points within condensation domains. NATURE CHEMISTRY 11 (7), pp. 653 - 661 (2019)

Shi, Y.-N.; Pusch, S.; Shi, Y.-M.; Richter, C.; Macia-Vicente, J. G.; Schwalbe, H.; Kaiser, M.; Opatz, T.; Bode, H. B.: (+/-)-Alternarlactones A and B, Two Antiparasitic Alternariol-like Dimers from the Fungus Alternaria alternata P1210 Isolated from the Halophyte Salicornia sp. JOURNAL OF ORGANIC CHEMISTRY 84 (17), pp. 11203 - 11209 (2019)

Tobias, N. J.; Parra-Rojas, C.; Shi, Y.-N.; Shi, Y.-M.; Simonyi, S.; Thanwisai, A.; Vitta, A.; Chantratita, N.; Hernandez-Vargas, E. A.; Bode, H. B.: Cyclo(tetrahydroxybutyrate) production is sufficient to distinguish between Xenorhabdus and Photorhabdus isolates in Thailand. ENVIRONMENTAL MICROBIOLOGY 21 (8), pp. 2921 - 2932 (2019)

Macia-Vicente, J. G.; Shi, Y.-N.; Cheikh-Ali, Z.; Gruen, P.; Glynou, K.; Kia, S. H.; Piepenbring, M.; Bode, H. B.: Metabolomics-based chemotaxonomy of root endophytic fungi for natural products discovery. ENVIRONMENTAL MICROBIOLOGY 20 (3), pp. 1253 - 1270 (2018)

Su, L.; Souaibou, Y.; Hôtel, L.; Jacob, C.; Grün, P.; Shi, Y.-N.; Chateau, A.; Pinel, S.; Bode, H. B.; Aigle, B. et al.; Weissman, K. J.: Correction: Exploiting the inherent promiscuity of the acyl transferase of the stambomycin polyketide synthase for the mutasynthesis of analogues, Chemical Science 16, p. 5310 (2025)

Grammbitter, G. L. C.; Shi, Y.-M.; Shi, Y.-N.; Vemulapalli, S. P. B.; Richter, C.; Schwalbe, H.; Alanjary, M.; Schüffler, A.; Witt, M.; Griesinger, C. et al.; Bode, H. B.: The chemical structure of widespread microbial aryl polyene lipids. bioRxiv: the preprint server for biology, 2020.12.19.423268 (2020)