Publications of Daniel Schindler

Koebel, Tania S., Palhares, Rafael Melo, Fromm, Christin, Szymanski, Witold G., Angelidou, Georgia, Glatter, Timo, Georg, Jens, Berghoff, Bork A. and Schindler, Daniel: (2022) An easy-to-use plasmid toolset for efficient generation and benchmarking of synthetic small RNAs in bacteria, ACS Synthetic Biology, Washington, D.C., American Chemical Society, 11 (9), pp. 2989–3003.

Ong, Jun Yang, Swidah, Reem, Monti, Marco, Schindler, Daniel, Dai, Junbiao and Cai, Yizhi: (2021) SCRaMbLE: A study of its robustness and challenges through enhancement of Hygromycin B resistance in a semi-synthetic yeast, Bioengineering, Basel, Switzerland, MDPI, 8 (3).

Luo, Zhouqing, Yu, Kang, Xie, Shangqian, Monti, Marco, Schindler, Daniel, Fang, Yuan, Zhao, Shijun, Liang, Zhenzhen, Jiang, Shuangying, Luan, Meiwei, Xiao, Chuanle, Cai, Yizhi and Dai, Junbiao: (2021) Compacting a synthetic yeast chromosome arm, Genome Biology: Biology for the Post-Genomic Era, London, BioMed Central Ltd., 22 (1).

Schindler, Daniel: (2020) Genetic Engineering and Synthetic Genomics in Yeast to Understand Life and Boost Biotechnology, Bioengineering-Basel, 7 (4), pp. 137-Article No.: 137.

Zhao, Yuxin, Yao, Zhanyi, Ploessl, Deon, Ghosh, Saptarshi, Monti, Marco, Schindler, Daniel, Gao, Meirong, Cai, Yizhi, Qiao, Mingqiang, Yang, Chao, Cao, Mingfeng and Shao, Zengyi: (2020) Leveraging the Hermes Transposon to Accelerate the Development of Nonconventional Yeast-based Microbial Cell Factories, ACS SYNTHETIC BIOLOGY, 9 (7), pp. 1736–1752.

Bruhn, Matthias, Schindler, Daniel, Kemter, Franziska S., Wiley, Michael R., Chase, Kitty, Koroleva, Galina I., Palacios, Gustavo, Sozhamannan, Shanmuga and Waldminghaus, Torsten: (2018) Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome, FRONTIERS IN MICROBIOLOGY, 9, November.

Schindler, Daniel, Dai, Junbiao and Cai, Yizhi: (2018) Synthetic genomics: a new venture to dissect genome fundamentals and engineer new functions, CURRENT OPINION IN CHEMICAL BIOLOGY, 46, October, pp. 56–62.

Schallopp, Nadine, Milbredt, Sarah, Sperlea, Theodor, Kemter, Franziska S., Bruhn, Matthias, Schindler, Daniel and Waldminghaus, Torsten: (2018) Establishing a System for Testing Replication Inhibition of the Vibrio cholerae Secondary Chromosome in Escherichia coli, ANTIBIOTICS-BASEL, 7 (1).

Messerschmidt, Sonja J., Schindler, Daniel, Zumkeller, Celine M., Kemter, Franziska S., Schallopp, Nadine and Waldminghaus, Torsten: (2016) Optimization and characterization of the synthetic secondary chromosome synVicII in Escherichia coli, FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 4, December.

Schindler, Daniel, Milbredt, Sarah, Sperlea, Theodor and Waldminghaus, Torsten: (2016) Design and Assembly of DNA Sequence Libraries for Chromosomal Insertion in Bacteria Based on a Set of Modified MoClo Vectors, ACS SYNTHETIC BIOLOGY, 5 (12), pp. 1362–1368.

Schindler, Daniel and Waldminghaus, Torsten: (2015) Synthetic chromosomes, FEMS MICROBIOLOGY REVIEWS, 39 (6), pp. 871–891.

Messerschmidt, Sonja J., Kemter, Franziska S., Schindler, Daniel and Waldminghaus, Torsten: (2015) Synthetic secondary chromosomes in Escherichia coli based on the replication origin of chromosome II in Vibrio cholerae, SI, 10 (2), pp. 302–314.

Schindler, Daniel and Nowrousian, Minou: (2014) The polyketide synthase gene pks4 is essential for sexual development and regulates fruiting body morphology in Sordaria macrospora, FUNGAL GENETICS AND BIOLOGY, 68, July, pp. 48–59.

Schindler, Daniel and Waldminghaus, Torsten: (2013) "Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response, BMC GENOMICS, 14, September.

Gesing, Stefan, Schindler, Daniel and Nowrousian, Minou: (2013) Suppression subtractive hybridization and comparative expression analysis to identify developmentally regulated genes in filamentous fungi, JOURNAL OF BASIC MICROBIOLOGY, 53 (9), pp. 742–751.

Gesing, Stefan, Schindler, Daniel, Fraenzel, Benjamin, Wolters, Dirk and Nowrousian, Minou: (2012) The histone chaperone ASF1 is essential for sexual development in the filamentous fungus Sordaria macrospora, MOLECULAR MICROBIOLOGY, 84 (4), pp. 748–765.

de Vries, Stijn Tobias, Kley, Laura and Schindler, Daniel: (2025) Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly, in Schindler, Daniel Ed., Golden Gate Cloning. Methods in Molecular Biology, Humana, New York, NY, pp. 105–131.

Köbel, Tania S. and Schindler, Daniel: (2025) Automation and miniaturization of Golden Gate DNA Assembly reactions using acoustic dispensers, in Schindler, Daniel Ed., Golden Gate Cloning. Methods in Molecular Biology, Humana, New York, NY, pp. 149–169.

Ramírez Rojas, Adán Andrés, Brinkmann, Cedric K. and Schindler, Daniel: (2025) Validation of Golden Gate Assemblies using highly multiplexed nanopore amplicon sequencing, in Schindler, Daniel Ed., Golden Gate Cloning. Methods in Molecular Biology, Humana, New York, NY, pp. 171–196.

Zumkeller, Celine, Schindler, Daniel, Felder, Jennifer and Waldminghaus, Torsten: (2024) Modular Assembly of Synthetic Secondary Chromosomes, in Dame, Remus T. Ed., Bacterial Chromatin. Methods in Molecular Biology, 2819th ed., Humana, New York, NY, pp. 157–187.