Publications of Daniel Schindler

Brück, M.; Berghoff, B. A.; Schindler, D.: In Silico Design, In Vitro Construction, and In Vivo Application of Synthetic Small Regulatory RNAs in Bacteria. In: Synthetic Biology. Methods in Molecular Biology, Vol. 2760 (Ed. Braman, J. C.). Humana, New York, NY. (2024)

Zumkeller, C.; Schindler, D.; Waldminghaus, T.: Modular Assembly of Synthetic Secondary Chromosomes. In: BACTERIAL CHROMATIN: Methods and Protocols, pp. 71 - 94. (2018)

Sendker, F. L.; Schlotthauer, T. J.; Mais, C.-N.; Lo, Y. K.; Girbig, M.; Bohn, S.; Heimerl, T.; Schindler, D.; Weinstein, A.; Metzger, B. P. et al.; Thornton, J. W.; Pillai, A.; Bange, G.; Schuller, J.; Hochberg, G. K. A.: Frequent transitions in self-assembly across the evolution of a central metabolic enzyme. bioRxiv: the preprint server for biology, 2024.07.05.602260 (2024)

de Vries, S. T.; Koebel, T. S.; Sanal, A.; Schindler, D.: In- & Out-Cloning: Plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly. bioRxiv: the preprint server for biology, 2024.06.22.600171 (2024)

Brueck, M.; Koebel, T. S.; Dittmar, S.; Ramírez Rojas, A. A.; Georg, J.; Berghoff, B. A.; Schindler, D.: A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs. bioRxiv: the preprint server for biology, 2024.04.24.590872 (2024)

Wolfram-Schauerte, M.; Moskalchuk, A.; Pozhydaieva, N.; Ramírez Rojas, A. A.; Schindler, D.; Kaiser, S.; Paczia, N.; Höfer, K.: T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme. bioRxiv: the preprint server for biology, 2024.04.04.588121 (2024)

de Vries, S. T.; Kley, L.; Schindler, D.: Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly. arXiv, arXiv.2402.03410 (2024)

Pozhydaieva, N.; Billau, F. A.; Wolfram-Schauerte, M.; Ramírez Rojas, A. A.; Paczia, N.; Schindler, D.; Höfer, K.: Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. bioRxiv: the preprint server for biology, 2024.01.28.577628 (2024)

Rojas, A. A. R.; Brinkmann, C. K.; Schindler, D.: Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing. arXiv, arXiv:2401.14191 (2024)

Su, L.; Huber, E. M.; Westphalen, M.; Gellner, J.; Bode, E.; Köbel, T.; Grün, P.; Alanjary, M. M.; Glatter, T.; Schindler, D. et al.; Groll, M.; Bode, H. B.: Identification, structure and function of the methyltransferase involved in the biosynthesis of the dithiolopyrrolone antibiotic xenorhabdin. bioRxiv: the preprint server for biology, 2024.01.12.575338 (2024)

Köbel, T. S.; Schindler, D.: Automation and miniaturization of Golden Gate DNA assembly reactions using acoustic dispensers. arXiv, arXiv.2310.00325 (2023)

Brueck, M.; Berghoff, B. A.; Schindler, D.: In silico design, in vitro construction and in vivo application of synthetic small regulatory RNAs in bacteria. arXiv, arXiv.2304.14932 (2023)

Abramczyk, D.; Sanchez Olmos, M. d. C.; Ramírez Rojas, A. A.; Schindler, D.; Robertson, D.; McColm, S.; Marston, A.; Barlow, P.: A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material. bioRxiv: the preprint server for biology, 2023.10.05.561004 (2023)

Ramming, L.; Stukenberg, D.; Sanchez Olmos, M. d. C.; Becker, A.; Schindler, D.: DNA replication is not a limiting factor for the rapid growth of Vibrio natriegens. bioRxiv: the preprint server for biology, 2023.05.26.541695 (2023)

Jiang, S.; Luo, Z.; Yu, K.; Zhao, S.; Cai, Z.; Yu, W.; Wang, H.; Cheng, L.; Liang, Z.; Gao, H. et al.; Monti, M.; Schindler, D.; Huang, L.; Zeng, C.; Zhang, W.; Zhou, C.; Tang, Y.; Li, T.; Ma, Y.; Cai, Y.; Boeke, J. D.; Dai, J.: Reconstruct a eukaryotic chromosome arm by de novo design and synthesis. bioRxiv: the preprint server for biology, 2022.10.04.509869 (2022)

Lindeboom, T. A.; Olmos, M. d. C. S.; Schulz, K.; Brinkmann, C. K.; Rojas, A. A. R.; Hochrein, L.; Schindler, D.: L-SCRaMbLE creates large-scale genome rearrangements in synthetic Sc2.0 chromosomes. bioRxiv: the preprint server for biology, 2022.12.12.519280 (2022)

Schindler, D.; Walker, R. S.K.; Jiang, S.; Brooks, A. N.; Wang, Y.; Müller, C. A.; Cockram, C.; Luo, Y.; García, A.; Schraivogel, D. et al.; Mozziconacci, J.; Blount, B. A.; Cai, J.; Ogunlana, L.; Liu, W.; Jönsson, K.; Abramczyk, D.; Garcia-Ruiz, E.; Turowski, T. W.; Swidah, R.; Ellis, T.; Antequera, F.; Shen, Y.; Nieduszynski, C. A.; Koszul, R.; Dai, J.; Steinmetz, L. M.; Boeke, J. D.; Cai, Y.: Design, construction, and functional characterization of a tRNA neochromosome in yeast. bioRxiv: the preprint server for biology, 2022.10.03.510608 (2022)

Shen, Y.; Gao, F.; Wang, Y.; Wang, Y.; Zheng, J.; Gong, J.; Zhang, J.; Luo, Z.; Schindler, D.; Deng, Y. et al.; Ding, W.; Lin, T.; Swidah, R.; Zhao, H.; Jiang, S.; Zeng, C.; Chen, S.; Chen, T.; Wang, Y.; Luo, Y.; Mitchell, L.; Bader, J. S.; Zhang, G.; Shen, X.; Wang, J.; Fu, X.; Dai, J.; Boeke, J. D.; Yang, H.; Xu, X.; Cai, Y.: Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. bioRxiv: the preprint server for biology, 2022.09.01.506252 (2022)