Publications of Seigo Shima

Shima, S.; Pilak, O.; Vogt, S.; Schick, M.; Stagni, M. S.; Meyer-Klaucke, W.; Warkentin, E.; Thauer, R. K.; Ermler, U.: The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site. Science 321 (5888), pp. 572 - 575 (2008)

Guo, Y.; Wang, H.; Xiao, Y.; Vogt, S.; Thauer, R. K.; Shima, S.; Volkers, P. I.; Rauchfuss, T. B.; Pelmenschikov, V.; Case, D. A. et al.; Alp, E. E.; Sturhahn, W.; Yoda, Y.; Cramer, S. P.: Characterization of the Fe site in iron-sulfur cluster-free hydrogenase (Hmd) and of a model compound via nuclear resonance vibrational spectroscopy (NRVS). Inorganic Chemistry 47 (10), pp. 3969 - 3977 (2008)

Ettwig, K. F.; Shima, S.; van de Pas-Schoonen, K. T.; Kahnt, J.; Medema, M. H.; op den Camp, H. J. M.; Jetten, M. S. M.; Strous, M.: Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environmental Microbiology 10 (11), pp. 3164 - 3173 (2008)

Shima, S.: [Structure of [Fe]-hydrogenase and the convergent evolution of the active site of hydrogenases]. Seikagaku 80 (9), pp. 846 - 849 (2008)

Vogt, S.; Lyon, E.; Shima, S.; Thauer, R. K.: The exchange activities of [Fe] hydrogenase (iron-sulfur-cluster-free hydrogenase) from methanogenic archaea in comparison with the exchange activities of [FeFe] and [NiFe] hydrogenases. Journal of Biological Inorganic Chemistry 13 (1), pp. 97 - 106 (2008)

Kahnt, J.; Buchenau, B.; Mahlert, F.; Krueger, M.; Shima, S.; Thauer, R. K.: Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea. The FEBS Journal 274, pp. 4913 - 4921 (2007)

Seedorf, H.; Hagemeier, C.; Shima, S.; Thauer, R. K.; Warkentin, E.; Ermler, U.: Structure of coenzyme F₄₂₀ H₂ oxidase (FprA), a di-iron flavoprotein from methanogenic Archaea catalyzing the reduction of O₂ to H₂ O. The FEBS Journal 274, pp. 1588 - 1599 (2007)

Korbas, M.; Vogt, S.; Meyer-Klaucke, W.; Bill, E.; Lyon, E.; Thauer, R. K.; Shima, S.: The Iron-Sulfur Cluster-free Hydrogenase (Hmd) Is a Metalloenzyme with a Novel Iron Binding Motif. Journal of Biological Chemistry 281 (41), pp. 30804 - 30813 (2006)

Pilak, O.; Mamat, B.; Vogt, S.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.; Vonrhein, C.; Warkentin, E.; Ermler, U.: The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase. Journal of Molecular Biology 358 (3), pp. 798 - 809 (2006)

Acharya, P.; Eberhard, W.; Ulrich, E.; Rudolf, T.; Shima, S.: The Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with its Coenzymes. Journal of Molecular Biology 357, pp. 870 - 879 (2006)

Shima, S.; Thauer, R. K.: Methyl-coenzyme M reductase and the anaerobic oxidation of methane in methanotrophic Archaea. Current Opinion in Microbiology 8 (6), pp. 643 - 648 (2005)

Shima, S.; Lyon, E. J.; Thauer, R. K.; Mienert, B.; Bill, E.: Mössbauer studies of the iron-sulfur cluster-free hydrogenase: The electronic state of the mononuclear Fe active site. Journal of the American Chemical Society 127 (29), pp. 10430 - 10435 (2005)

Aufhammer, S. W.; Warkentin, E.; Ermler, U.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.: Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F₄₂₀: Architecture of the F₄₂₀/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family. Protein Science 14 (7), pp. 1840 - 1849 (2005)

Warkentin, E.; Hagemeier, C. H.; Shima, S.; Thauer, R. K.; Ermler, U.: The structure of F₄₂₀-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure. Acta Crystallographica Section D - Structural Biology 61, pp. 198 - 202 (2005)

Sakasegawa, S. I.; Hagemeier, C. H.; Thauer, R. K.; Essen, L. O.; Shima, S.: Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP(+) preference. Protein Science 13 (12), pp. 3161 - 3171 (2004)

Lyon, E. J.; Shima, S.; Boecher, R.; Thauer, R. K.; Grevels, F. W.; Bill, E.; Roseboom, W.; Albracht, S. P. J.: Carbon monoxide as an intrinsic ligand to iron in the active site of the iron-sulfur-cluster-free hydrogenase H₂-Forming methylenetetrahydromethanopterin dehydrogenase as revealed by infrared spectroscopy. The Journal of Organic Chemistry 126 (43), pp. 14239 - 14248 (2004)

Seedorf, H.; Dreisbach, A.; Hedderich, R.; Shima, S.; Thauer, R. K.: F₄₂₀H₂ oxidase (FprA) from Methanobrevibacter arboriphilus, a coenzyme F₄₂₀-dependent enzyme involved in O₂ detoxification. Archives of Microbiology 182 (2-3), pp. 126 - 137 (2004)

Aufhammer, S. W.; Warkentin, E.; Berk, H.; Shima, S.; Thauer, R. K.; Ermler, U.: Coenzyme binding in F₄₂₀-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family. Structure 12 (3), pp. 361 - 370 (2004)

Lyon, E. J.; Shima, S.; Buurman, G.; Chowdhuri, S.; Batschauer, A.; Steinbach, K.; Thauer, R. K.: UV-A/blue-light inactivation of the 'metal-free' hydrogenase (Hmd) from methanogenic archaea - The enzyme contains functional iron after all. European Journal of Biochemistry 271 (1), pp. 195 - 204 (2004)

Shima, S.; Lyon, E. J.; Sordel-Klippert, M. S.; Kauss, M.; Kahnt, J.; Thauer, R. K.; Steinbach, K.; Xie, X. L.; Verdier, L.; Griesinger, C.: The cofactor of the iron-sulfur cluster free hydrogenase Hmd: Structure of the light-inactivation product. Angewandte Chemie International Edition 43 (19), pp. 2547 - 2551 (2004)