Publications of Daniel Schindler

Brück, Michel, Berghoff, Bork A. and Schindler, Daniel: (2024) In Silico Design, In Vitro Construction, and In Vivo Application of Synthetic Small Regulatory RNAs in Bacteria, in Braman, J. C. Ed., Synthetic Biology. Methods in Molecular Biology, Humana, New York, NY.

Zumkeller, Celine, Schindler, Daniel and Waldminghaus, Torsten: (2018) Modular Assembly of Synthetic Secondary Chromosomes, in BACTERIAL CHROMATIN: Methods and Protocols, (Methods in Molecular Biology, 1837), pp. 71–94.

Xu, Wenhao, Jalomo-Khayrova, Ekaterina, Gumerov, Vadim M, Ross, Patricia A., Köbel, Tania S., Schindler, Daniel, Bange, Gert, Zhulin, Igor B. and Sourjik, Victor: (2025) Specificities of chemosensory receptors in the human gut microbiota, bioRxiv: the preprint server for biology.

Sendker, Franziska Luisa, Schlotthauer, Tabea J., Mais, Christopher-Nils, Lo, Yat Kei, Girbig, Mathias, Bohn, Stefan, Heimerl, Thomas, Schindler, Daniel, Weinstein, Arielle, Metzger, Brian P, Thornton, Joseph W, Pillai, Arvind, Bange, Gert, Schuller, Jan and Hochberg, Georg K. A.: (2024) Frequent transitions in self-assembly across the evolution of a central metabolic enzyme, bioRxiv: the preprint server for biology.

de Vries, Stijn Tobias, Koebel, Tania S., Sanal, Ahmet and Schindler, Daniel: (2024) In- & Out-Cloning: Plasmid toolboxes for scarless transcription unit and modular Golden Gate acceptor plasmid assembly, bioRxiv: the preprint server for biology.

Brueck, Michel, Koebel, Tania S., Dittmar, Sophie, Ramírez Rojas, Adán Andrés, Georg, Jens, Berghoff, Bork A. and Schindler, Daniel: (2024) A library-based approach allows systematic and rapid evaluation of seed region length and reveals design rules for synthetic bacterial small RNAs, bioRxiv: the preprint server for biology.

Wolfram-Schauerte, Maik, Moskalchuk, Anastassiya, Pozhydaieva, Nadiia, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Kaiser, Stefanie, Paczia, Nicole and Höfer, Katharina: (2024) T4 phage RNA is NAD-capped and alters the NAD-cap epitranscriptome of Escherichia coli during infection through a phage-encoded decapping enzyme, bioRxiv: the preprint server for biology.

de Vries, Stijn Tobias, Kley, Laura and Schindler, Daniel: (2024) Use of a Golden Gate plasmid set enabling scarless MoClo-compatible transcription unit assembly, arXiv.

Pozhydaieva, Nadiia, Billau, Franziska Anna, Wolfram-Schauerte, Maik, Ramírez Rojas, Adán Andrés, Paczia, Nicole, Schindler, Daniel and Höfer, Katharina: (2024) Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications, bioRxiv: the preprint server for biology.

Rojas, Adan A Ramirez, Brinkmann, Cedric K and Schindler, Daniel: (2024) Validation of Golden Gate assemblies using highly multiplexed Nanopore amplicon sequencing, arXiv.

Su, Li, Huber, Eva M., Westphalen, Margaretha, Gellner, Jonas, Bode, Edna, Köbel, Tania, Grün, Peter, Alanjary, Mohammad M., Glatter, Timo, Schindler, Daniel, Groll, Michael and Bode, Helge B.: (2024) Identification, structure and function of the methyltransferase involved in the biosynthesis of the dithiolopyrrolone antibiotic xenorhabdin, bioRxiv: the preprint server for biology.

Köbel, Tania S. and Schindler, Daniel: (2023) Automation and miniaturization of Golden Gate DNA assembly reactions using acoustic dispensers, arXiv.

Brueck, Michael, Berghoff, Bork A. and Schindler, Daniel: (2023) In silico design, in vitro construction and in vivo application of synthetic small regulatory RNAs in bacteria, arXiv.

Abramczyk, Dariusz, Sanchez Olmos, Maria del Carmen, Ramírez Rojas, Adán Andrés, Schindler, Daniel, Robertson, Daniel, McColm, Stephen, Marston, Adele and Barlow, Paul: (2023) A supernumerary synthetic chromosome in Komagataella phaffii as a repository for extraneous genetic material, bioRxiv: the preprint server for biology.

Ramming, Lea, Stukenberg, Daniel, Sanchez Olmos, Maria del Carmen, Becker, Anke and Schindler, Daniel: (2023) DNA replication is not a limiting factor for the rapid growth of Vibrio natriegens, bioRxiv: the preprint server for biology.

Jiang, Shuangying, Luo, Zhouqing, Yu, Kang, Zhao, Shijun, Cai, Zelin, Yu, Wenfei, Wang, Hui, Cheng, Li, Liang, Zhenzhen, Gao, Hui, Monti, Marco, Schindler, Daniel, Huang, Linsen, Zeng, Cheng, Zhang, Weimin, Zhou, Chun, Tang, Yuanwei, Li, Tianyi, Ma, Yingxin, Cai, Yizhi, Boeke, Jef D. and Dai, Junbiao: (2022) Reconstruct a eukaryotic chromosome arm by de novo design and synthesis, bioRxiv: the preprint server for biology.

Lindeboom, Timon Alexander, Olmos, María del Carmen Sánchez, Schulz, Karina, Brinkmann, Cedric Kilian, Rojas, Adán Andrés Ramírez, Hochrein, Lena and Schindler, Daniel: (2022) L-SCRaMbLE creates large-scale genome rearrangements in synthetic Sc2.0 chromosomes, bioRxiv: the preprint server for biology.

Schindler, Daniel, Walker, Roy S.K., Jiang, Shuangying, Brooks, Aaron N., Wang, Yun, Müller, Carolin A., Cockram, Charlotte, Luo, Yisha, García, Alicia, Schraivogel, Daniel, Mozziconacci, Julien, Blount, Benjamin A., Cai, Jitong, Ogunlana, Lois, Liu, Wei, Jönsson, Katarina, Abramczyk, Dariusz, Garcia-Ruiz, Eva, Turowski, Tomasz W., Swidah, Reem, Ellis, Tom, Antequera, Francisco, Shen, Yue, Nieduszynski, Conrad A., Koszul, Romain, Dai, Junbiao, Steinmetz, Lars M., Boeke, Jef D. and Cai, Yizhi: (2022) Design, construction, and functional characterization of a tRNA neochromosome in yeast, bioRxiv: the preprint server for biology.

Shen, Yue, Gao, Feng, Wang, Yun, Wang, Yuerong, Zheng, Ju, Gong, Jianhui, Zhang, Jintao, Luo, Zhouqing, Schindler, Daniel, Deng, Yang, Ding, Weichao, Lin, Tao, Swidah, Reem, Zhao, Hongcui, Jiang, Shuangying, Zeng, Cheng, Chen, Shihong, Chen, Tai, Wang, Yong, Luo, Yisha, Mitchell, Leslie, Bader, Joel S., Zhang, Guojie, Shen, Xia, Wang, Jian, Fu, Xian, Dai, Junbiao, Boeke, Jef D., Yang, Huanming, Xu, Xun and Cai, Yizhi: (2022) Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast, bioRxiv: the preprint server for biology.