Publications
2024
Preprint
Collective dynamics of Escherichia coli growth under near-lethal acid stress. bioRxiv: the preprint server for biology, 2024.10.17.618973 (2024)
Journal Article
15 (1), 7238 (2024)
Enhanced metabolic entanglement emerges during the evolution of an interkingdom microbial community. Nature Communications
Preprint
A toolbox of FRET-based c-di-GMP biosensors and its FRET-To-Sort application for genome-wide mapping of the second messenger regulatory network. bioRxiv: the preprint server for biology, 2024.08.21.609041 (2024)
Journal Article
80, 102517 (2024)
Editorial overview: Systems and synthetic biology of microbial cells and communities. Current Opinion in Microbiology
Journal Article
18 (1), wrae096 (2024)
Genome-wide screen of genetic determinants that govern Escherichia coli growth and persistence in lake water. The ISME Journal
Journal Article
25, pp. 2162 - 2167 (2024)
Cell consciousness: a dissenting opinion: The cellular basis of consciousness theory lacks empirical evidence for its claims that all cells have consciousness. EMBO Reports
Journal Article
15 (6), e01039-24 (2024)
Framework for exploring the sensory repertoire of the human gut microbiota. mBio
Preprint
The SPFH complex HflK-HflC regulates aerobic respiration in bacteria. bioRxiv: the preprint server for biology, 2024.04.21.590321 (2024)
Preprint
Physics and physiology determine strategies of bacterial investment in flagellar motility. bioRxiv: the preprint server for biology, 2024.03.30.587422 (2024)
Preprint
Experimental evolution of a reduced bacterial chemotaxis network. bioRxiv: the preprint server for biology, 2024.03.14.584839 (2024)
2023
Journal Article
8 (8), pp. 1549 - 1560 (2023)
D-amino acids signal a stress-dependent run-away response in Vibrio cholerae. Nature Microbiology
Journal Article
63 (5-6), e202200080 (2023)
Bacterial quorum sensing signals at the interdomain interface. Israel Journal of Chemistry
Journal Article
14 (1), 2173 (2023)
Dynamic fluctuations in a bacterial metabolic network. Nature Communications
Journal Article
8 (2), pp. 207 - 214 (2023)
Chemotaxis and autoinducer-2 signalling mediate colonization and contribute to co-existence of Escherichia coli strains in the murine gut. Nature Microbiology
Journal Article
19 (5), e1010750 (2023)
Regulation by cyclic di-GMP attenuates dynamics and enhances robustness of bimodal curli gene activation in Escherichia coli. PLOS Genetics
Journal Article
14 (5), e02099-23 (2023)
Systematic mapping of chemoreceptor specificities for Pseudomonas aeruginosa. mBio 2022
Journal Article
11, e82654 (2022)
Dependence of diffusion in Escherichia coli cytoplasm on protein size, environmental conditions and cell growth. eLife
Journal Article
13 (5), e0165022 (2022)
The pH robustness of bacterial sensing. mBio
Journal Article
2 (4), pp. 386 - 394 (2022)
Discovery of a new chemoeffector for Escherichia coli chemoreceptor Tsr and identification of a molecular mechanism of repellent sensing. ACS Bio Med Chem Au
Journal Article
13 (2), e0345821 (2022)
Chemotaxis of the human pathogen Pseudomonas aeruginosa to the neurotransmitter acetylcholine. mBio
Journal Article
17 (3), pp. 371 - 381 (2022)
Impact of direct physical association and motility on fitness of a synthetic interkingdom microbial community. The ISME Journal 2021
Preprint
Construction of multicellular yeast networks using the communication toolkit with variable specificity and attenuation. bioRxiv: the preprint server for biology, 2021.09.27.462023 (2021)
Journal Article
29 (8), pp. 1211 - 1213 (2021)
Running after your host: Stimulation of bacterial motility promotes colonization. Cell Host & Microbe
Journal Article
45 (6), fuab038 (2021)
Multiple functions of flagellar motility and chemotaxis in bacterial physiology. FEMS Microbiology Reviews
Journal Article
7 (24), eabf8404 (2021)
Asymmetric mating behavior of isogamous budding yeast. Science Advances
Journal Article
10 (6), pp. 1284 - 1291 (2021)
Production and characterization of motile and chemotactic bacterial minicells. ACS Synthetic Biology
Journal Article
6 (2), pp. 151 - 156 (2021)
Quantitative image analysis of microbial communities with BiofilmQ. Nature Microbiology
Other
Reply to jobling, "Lysogeny of Escherichia coli by the obligately lytic bacteriophage T1: Not Proven", mBio 12, (2021)
2020
Journal Article
86 (21), e01113-20 (2020)
Multiple Drug-Induced Stress Responses Inhibit Formation of Escherichia coli Biofilms. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Journal Article
202 (16), e00305-20 (2020)
Functional Determinants of a Small Protein Controlling a Broadly Conserved Bacterial Sensor Kinase. JOURNAL OF BACTERIOLOGY
Journal Article
11 (1), 3494 (2020)
Design of a MAPK signalling cascade balances energetic cost versus accuracy of information transmission. NATURE COMMUNICATIONS
Journal Article
16 (5), e9009 (2020)
The protein architecture of the endocytic coat analyzed by FRET microscopy. MOLECULAR SYSTEMS BIOLOGY
Journal Article
113 (4), pp. 728 - 739 (2020)
Chemotaxis and cyclic-di-GMP signalling control surface attachment of Escherichia coli. MOLECULAR MICROBIOLOGY
Journal Article
117 (1), pp. 595 - 601 (2020)
Growth-rate dependent resource investment in bacterial motile behavior quantitatively follows potential benefit of chemotaxis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Journal Article
11 (1), 1176 (2020)
Ratiometric population sensing by a pump-probe signaling system in Bacillus subtilis. NATURE COMMUNICATIONS
Journal Article
11 (2), e02269-19 (2020)
Flagellum-Mediated Mechanosensing and RflP Control Motility State of Pathogenic Escherichia coli. MBIO 2019
Journal Article
10, 5329 (2019)
Chemotactic behaviour of Escherichia coli at high cell density. Nature Communications
Other
Cover Feature: Reconstitution and Coupling of DNA Replication and Segregation in a Biomimetic System (ChemBioChem 20/2019), SI 20, p. 2532 - 2532 (2019)
Journal Article
20 (20), pp. 2633 - 2642 (2019)
Reconstitution and Coupling of DNA Replication and Segregation in a Biomimetic System. SI
Journal Article
3 (6), 1800315 (2019)
Functional Modules of Minimal Cell Division for Synthetic Biology. SI
Journal Article
3 (6), 1800316 (2019)
DNA Segregation in Natural and Synthetic Minimal Systems. Advanced Biosystems
Journal Article
10 (5), e01884-19 (2019)
Quorum Sensing and Metabolic State of the Host Control Lysogeny-Lysis Switch of Bacteriophage T1. MBIO
Journal Article
16, pp. 145 - + (2019)
Inefficient Secretion of Anti-sigma Factor FlgM Inhibits Bacterial Motility at High Temperature. ISCIENCE
Journal Article
Red/Far-Red Light Switchable Cargo Attachment and Release in Bacteria-Driven Microswimmers. Advanced Healthcare Materials, 1900956 (2019)
2018
Journal Article
12 (11), pp. 2736 - 2747 (2018)
Chemotaxis of Escherichia coli to major hormones and polyamines present in human gut. ISME JOURNAL
Journal Article
7 (11), pp. 2618 - 2626 (2018)
A System for Gene Expression Noise Control in Yeast. ACS SYNTHETIC BIOLOGY
Journal Article
57 (41), pp. 13382 - 13392 (2018)
MaxSynBio: Avenues Towards Creating Cells from the Bottom Up. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
Journal Article
9, 2927 (2018)
Inverted signaling by bacterial chemotaxis receptors. NATURE COMMUNICATIONS
Journal Article
8, 9801 (2018)
Motility and chemotaxis of bacteria-driven microswimmers fabricated using antigen 43-mediated biotin display. SCIENTIFIC REPORTS
Journal Article
3 (17), UNSP eaar4423 (2018)
Soft erythrocyte-based bacterial microswimmers for cargo delivery. SCIENCE ROBOTICS
Journal Article
7 (4), pp. 1105 - 1115 (2018)
Engineered Production of Short-Chain Acyl-Coenzyme A Esters in Saccharomyces cerevisiae. ACS SYNTHETIC BIOLOGY
Journal Article
293 (6), pp. 2149 - 2158 (2018)
Transmembrane region of bacterial chemoreceptor is capable of promoting protein clustering. JOURNAL OF BIOLOGICAL CHEMISTRY
Journal Article
114 (1), pp. 223 - 236 (2018)
Sharing of Phosphatases Promotes Response Plasticity in Phosphorylation Cascades. BIOPHYSICAL JOURNAL
Review Article
45, pp. 22 - 29 (2018)
Stimulus sensing and signal processing in bacterial chemotaxis. CURRENT OPINION IN MICROBIOLOGY
Journal Article
1729, pp. 107 - 126 (2018)
FRET Analysis of the Chemotaxis Pathway Response. Methods Mol Biol. 2017
Journal Article
84 (5) (2017)
Autoinducer 2-Dependent Escherichia coli Biofilm Formation Is Enhanced in a Dual-Species Coculture. Appl Environ Microbiol
Journal Article
114 (50), pp. E10792 - E10798 (2017)
Osmosensing by the bacterial PhoQ/PhoP two-component system. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
113 (11), pp. 2321 - 2325 (2017)
Drift and Behavior of E. coli Cells. Biophysical Journal
Journal Article
Multiple sources of slow activity fluctuations in a bacterial chemosensory network. eLife, 6:e26796 (2017)
Journal Article
13 (10), pp. 1006 - 1013 (2017)
Self-organization and positioning of bacterial protein clusters. Nature Physics
Journal Article
6, e26607 (2017)
Mechanism of bidirectional thermotaxis in Escherichia coli. eLife
Journal Article
18 (4), pp. 866 - 877 (2017)
Evolutionary Remodeling of Bacterial Motility Checkpoint Control. Cell Reports
Journal Article
47 (5), pp. 298 - 305 (2017)
Synthetische Biologie. Biologie in unserer Zeit
Review Article
39, pp. 24 - 33 (2017)
Emergent properties of bacterial chemotaxis pathway. CURRENT OPINION IN MICROBIOLOGY 2016
Journal Article
7, p. 1568 (2016)
Diversification of Gene Expression during Formation of Static Submerged Biofilms by Escherichia coli. Front Microbiol
Journal Article
5 (9), pp. 989 - 1001 (2016)
Engineering Hybrid Chemotaxis Receptors in Bacteria. ACS Synthetic Biology
Journal Article
7, 12984 (2016)
Chemotaxis towards autoinducer 2 mediates autoaggregation in Escherichia coli. Nature Communications
Journal Article
7, 12590 (2016)
Sensory input attenuation allows predictive sexual response in yeast. Nature Communications
Journal Article
14 (8), e2000074 (2016)
Sugar Influx Sensing by the Phosphotransferase System of Escherichia coli. PLoS Biology
Journal Article
5, e14029 (2016)
A FRET-based study reveals site-specific regulation of spindle position checkpoint proteins at yeast centrosomes. eLife 2015
Journal Article
427 (23 Sp. Iss. SI), pp. 3785 - 3792 (2015)
Bacterial Networks in Cells and Communities. Journal of Molecular Biology
Journal Article
97 (3), pp. 488 - 501 (2015)
Specific gamma-aminobutyrate chemotaxis in pseudomonads with different lifestyle. Molecular Microbiology
Journal Article
96 (6), pp. 1272 - 1282 (2015)
Relation between chemotaxis and consumption of amino acids in bacteria. Molecular Microbiology
Journal Article
96 (3), pp. 513 - 525 (2015)
Correlation between signal input and output in PctA and PctB amino acid chemoreceptor of Pseudomonas aeruginosa. Molecular Microbiology
Journal Article
10 (4), e0123646 (2015)
A Gateway-Based System for Fast Evaluation of Protein-Protein Interactions in Bacteria. PLoS ONE
Journal Article
10 (12), e0145582 (2015)
Importance of Multiple Methylation Sites in Escherichia coli Chemotaxis. PLOS ONE
Journal Article
197 (2), pp. 307 - 313 (2015)
Universal Response-Adaptation Relation in Bacterial Chemotaxis. Journal of Bacteriology
Review Article
13 (9), pp. 559 - 572 (2015)
Bacterial protein networks: properties and functions. NATURE REVIEWS MICROBIOLOGY 2014
Journal Article
10 (10), e1003870 (2014)
Predicting Chemical Environments of Bacteria from Receptor Signaling. PLoS Computational Biology
Journal Article
111 (31), pp. 11485 - 11490 (2014)
Secondary bacterial flagellar system improves bacterial spreading by increasing the directional persistence of swimming. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
28, pp. VI - VIII (2014)
Editorial overview: Systems biology: Advances in multi-scale systems biology applications. Current Opinion in Biotechnology
Journal Article
9 (4), e87815 (2014)
Exponential Signaling Gain at the Receptor Level Enhances Signal-to-Noise Ratio in Bacterial Chemotaxis. PLoS ONE
Journal Article
9 (1), e84904 (2014)
Imprecision of Adaptation in Escherichia coli Chemotaxis. PLoS ONE 2013
Journal Article
8 (10), p. e77708 (2013)
The sensory histidine kinases TorS and EvgS tend to form clusters in Escherichia coli cells. PLoS One
Journal Article
16 (2), pp. 161 - 78 (2013)
SiiA and SiiB are novel type I secretion system subunits controlling SPI4-mediated adhesion of Salmonella enterica. Cell Microbiol
Journal Article
110 (42), pp. 16814 - 9 (2013)
Discovery of novel chemoeffectors and rational design of Escherichia coli chemoreceptor specificity. Proc Natl Acad Sci U S A
Journal Article
9, p. 686 (2013)
Chromosome segregation by the Escherichia coli Min system. Mol Syst Biol
Journal Article
159 (Pt 11), pp. 2237 - 2248 (2013)
The beta-sliding clamp directs the localization of HdaA to the replisome in Caulobacter crescentus. Microbiology (Reading)
Journal Article
9 (7), p. e1003631 (2013)
Genome-scale co-evolutionary inference identifies functions and clients of bacterial Hsp90. PLoS Genet
Review Article
14 (8), pp. 667 - 669 (2013)
Bacterial regulatory networks-from self-organizing molecules to cell shape and patterns in bacterial communities. EMBO REPORTS 2012
Journal Article
19 (12), pp. 1347 - 55 (2012)
Hsp70 proteins bind Hsp100 regulatory M domains to activate AAA+ disaggregase at aggregate surfaces. Nat Struct Mol Biol
Journal Article
86 (6), pp. 1482 - 9 (2012)
Opposite responses by different chemoreceptors set a tunable preference point in Escherichia coli pH taxis. Mol Microbiol
Journal Article
109 (30), pp. 12159 - 64 (2012)
Chemotactic signaling via carbohydrate phosphotransferase systems in Escherichia coli. Proc Natl Acad Sci U S A
Journal Article
8 (5), pp. 422 - 428 (2012)
The energy-speed-accuracy tradeoff in sensory adaptation. Nat Phys
Journal Article
84 (4), pp. 736 - 47 (2012)
Physical map and dynamics of the chaperone network in Escherichia coli. Mol Microbiol
Journal Article
7 (11), p. e1002218 (2012)
Robust signal processing in living cells. PLoS Comput Biol
Journal Article
416 (2), pp. 192 - 207 (2012)
Energy complexes are apparently associated with the switch-motor complex of bacterial flagella. J Mol Biol
Review Article
24 (2), pp. 262 - 268 (2012)
Responding to chemical gradients: bacterial chemotaxis. CURRENT OPINION IN CELL BIOLOGY 2011
Journal Article
11, p. 222 (2011)
Effects of receptor modification and temperature on dynamics of sensory complexes in Escherichia coli chemotaxis. BMC Microbiol